gatk3的最后一个经典版本3.8

Go to file

Valentin Ruano-Rubio c5977e5c8f Correct wrong left-alignment of reads in HC bamout Story: ----- https://www.pivotaltracker.com/story/show/80684230 Changes: ------- - Corrected the bug: AlignmentUtils#createReadAlignedToRef was not realigning against the reference but the best haplotype for the read. Test: ---- - Added integration test in HaplotypeCallerIntegrationTest to check that the bug has been fixed. - Fixed md5s modified by this change; these are cause due to small changes in the state of the random-number generator and read vs variant site overlapping.		2014-11-10 10:09:58 -05:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Correct wrong left-alignment of reads in HC bamout	2014-11-10 10:09:58 -05:00
public	Correct wrong left-alignment of reads in HC bamout	2014-11-10 10:09:58 -05:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/