Mark DePristo c57198a1b9 Optimizations in VCFCodec ... -- Don't create an empty LinkedHashSet() for PASS fields. Just return Collections.emptySet() instead. -- For filter fields with actual values, returns an unmodifiableSet instead of one that can be changed		2011-09-02 08:46:17 -04:00
..
R	queueJobReport is a public feature of Queue	2011-08-29 17:20:54 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Optimizations in VCFCodec	2011-09-02 08:46:17 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Default jobreport is now jobPrefix, so you see logs like Q-2508.jobreport.txt	2011-08-28 19:19:45 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00