17 lines
1.2 KiB
Plaintext
17 lines
1.2 KiB
Plaintext
##fileformat=VCFv4.1
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##fileDate=20140820
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##source=mutatrix population genome simulator
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##seed=100
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##reference=ref.fasta
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##phasing=true
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##commandline=mutatrix ref.fasta --file-prefix mutations/ --sample-prefix 0 -n 1 --ploidy 2 --random-seed 100 --snp-rate 0.001
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##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate allele count">
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##INFO=<ID=TYPE,Number=A,Type=String,Description="Type of each allele (snp, ins, del, mnp, complex)">
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##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples at the site">
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##INFO=<ID=NA,Number=1,Type=Integer,Description="Number of alternate alleles">
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##INFO=<ID=LEN,Number=A,Type=Integer,Description="Length of each alternate allele">
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##INFO=<ID=MICROSAT,Number=0,Type=Flag,Description="Generated at a sequence repeat loci">
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##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 01
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20 10000000 . T TGTCTTAGTGTCGTATGGGCTTCCATATTCAACTTTCTTCTATAAGTAGAATATCTACACGTGATGCTCTGGTCTTTCTACTACACGTCTATTGTAGCTTAATCTTTTCCTCGGGGGGGAAGAGGCTGTTTAGAATCATACCTCCAACCGACATTAACCCTGTTGGATTATAACTAGGGGCAAATCCGGATATTGGTATACGGCCCTATTATTCTATGGGTCTACGCACCTAGTAGGCACCCACGCAGTCTCTGGCCCGACCCCA 99 . AC=2;LEN=264;NA=1;NS=1;TYPE=ins GT 1|1
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