23 lines
2.7 KiB
Plaintext
23 lines
2.7 KiB
Plaintext
##fileformat=VCFv4.0
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##MendelianViolationEvaluator="This file contains genotypes with mendelian violations in the input data. Please note that this file is entirely synthetic and does not represent true SNPs or genotypes observed."
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##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality">
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##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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##FORMAT=<ID=PL,Number=3,Type=Float,Description="Normalized, Phred-scaled likelihoods for AA,AB,BB genotypes where A=ref and B=alt; not applicable if site is not biallelic">
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#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TRIO_MOTHER TRIO_FATHER TRIO_CHILD PAIR_PARENT PAIR_CHILD UNRELATED_INDIVIDUAL_CONTROL
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1 10109 . A T 99 PASS . GT:GQ:PL 0/0:50:0,50,200 0/0:40:0,40,200 0/1:30:30,0,200 0/0:50:0,50,200 0/1:30:30,0,200 0/0:50:0,50,200
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1 10147 . C A 99 PASS . GT:GQ:PL 0/0:30:0,30,200 0/0:50:0,50,200 1/1:40:200,40,0 0/0:30:0,30,200 1/1:40:200,40,0 0/0:30:0,30,200
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1 10150 . C T 99 PASS . GT:GQ:PL 0/0:40:0,40,200 0/1:30:30,0,200 1/1:50:200,50,0 0/0:40:0,40,200 1/1:50:200,50,0 0/0:40:0,40,200
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1 10177 . A C 99 PASS . GT:GQ:PL 0/0:50:0,50,200 1/1:40:200,40,0 0/0:30:0,30,200 0/0:50:0,50,200 0/0:30:0,30,200 0/0:50:0,50,200
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1 10180 . T C 99 PASS . GT:GQ:PL 0/0:30:0,30,200 1/1:50:200,50,0 1/1:40:200,40,0 0/0:30:0,30,200 1/1:40:200,40,0 0/0:30:0,30,200
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1 10234 . C T 99 PASS . GT:GQ:PL 0/1:40:40,0,200 0/0:30:0,30,200 1/1:50:200,50,0 0/1:40:40,0,200 1/1:50:200,50,0 0/1:40:40,0,200
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1 10235 . T A 99 PASS . GT:GQ:PL 0/1:50:50,0,200 1/1:40:200,40,0 0/0:30:0,30,200 0/1:50:50,0,200 0/0:30:0,30,200 0/1:50:50,0,200
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1 10236 . A G 99 PASS . GT:GQ:PL 1/1:30:200,30,0 0/0:50:0,50,200 0/0:40:0,40,200 1/1:30:200,30,0 0/0:50:0,50,200 1/1:30:200,30,0
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1 10250 . A C 99 PASS . GT:GQ:PL 1/1:40:200,40,0 0/0:30:0,30,200 1/1:50:200,50,0 1/1:40:200,40,0 1/1:50:200,50,0 1/1:40:200,40,0
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1 10257 . A C 99 PASS . GT:GQ:PL 1/1:50:200,50,0 0/1:40:40,0,200 0/0:30:0,30,200 1/1:50:200,50,0 0/0:30:0,30,200 1/1:50:200,50,0
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1 10285 . T C 99 PASS . GT:GQ:PL 1/1:30:200,30,0 1/1:50:200,50,0 0/1:40:40,0,200 1/1:30:200,30,0 0/1:40:40,0,200 1/1:30:200,30,0
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1 10297 . C T 99 PASS . GT:GQ:PL 1/1:40:200,40,0 1/1:30:200,30,0 0/0:50:0,50,200 1/1:40:200,40,0 0/0:50:0,50,200 1/1:40:200,40,0
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1 10304 . A C 99 PASS . GT:GQ:PL 1/1:50:200,50,0 0/1:50:50,0,200 0/1:0:0,0,0 1/1:50:200,50,0 0/1:0:0,0,0 1/1:50:200,50,0
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1 10304 . A C 99 PASS . GT:GQ:PL 1/1:50:200,50,0 0/1:50:50,0,200 0/1:50:50,0,200 1/1:50:200,50,0 0/1:50:200,0,50 1/1:50:200,50,0
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1 10310 . A C 99 PASS . GT:GQ:PL 1/1:50:200,50,0 0/1:50:50,0,200 1/1:50:200,50,0 1/1:50:200,50,0 1/1:50:200,50,0 1/1:50:200,50,0
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1 10315 . C T 99 PASS . GT:GQ:PL 1/1:50:200,50,0 1/1:50:200,50,0 1/1:50:200,50,0 1/1:50:200,50,0 1/1:50:200,50,0 1/1:50:200,50,0
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