Eric Banks a26b04ba17 Extensive refactoring of the GATKReports. This was a beast. ... The practical differences between version 1.0 and this one (v1.1) are: * the underlying data structure now uses arrays instead of hashes, which should drastically reduce the memory overhead required to create large tables. * no more primary keys; you can still create arbitrary IDs to index into rows, but there is no special cased primary key column in the table. * no more dangerous/ugly table operations supported except to increment a cell's value (if an int) or to concatenate 2 tables. Integration tests change because table headers are different. Old classes are still lying around. Will clean those up in a subsequent commit.		2012-05-18 01:11:26 -04:00
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extensions/gatk	Minor manual merge update for List class to Seq interface usage.	2012-02-08 02:24:54 -05:00
function	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
pipeline	Extensive refactoring of the GATKReports. This was a beast.	2012-05-18 01:11:26 -04:00
util	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00