Mark DePristo f77d2e6965 Renamed NO_HEADER to the more accurate no_cmdline_in_header ... -- Also no_cmdline_in_header permits us to write contigs into the header, so that the shadow BCF system can work as well		2012-05-24 10:57:08 -04:00
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qscript/org/broadinstitute/sting/queue/qscripts	Minor updates to pacbio data processing script to make it work with the latest bwa version/settings.	2012-05-22 10:24:45 -04:00
src/org/broadinstitute/sting/queue	Renamed NO_HEADER to the more accurate no_cmdline_in_header	2012-05-24 10:57:08 -04:00
test/org/broadinstitute/sting/queue	Extensive refactoring of the GATKReports. This was a beast.	2012-05-18 01:11:26 -04:00