gatk3的最后一个经典版本3.8

hanna c4f0b4cab7 Oops. Javadoc output gets a lot cleaner when I remember to add the classpath. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@220 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-29 00:29:20 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Added documentation for our coding standards.	2009-03-25 19:42:09 +00:00
java	Reorganized GenomeLoc code to more clearly and better use the picard SequenceDictionary information.	2009-03-28 20:37:27 +00:00
python	Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter.	2009-03-24 03:58:03 +00:00
settings	Bump picard and samtools to latest.	2009-03-27 02:26:28 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Oops. Javadoc output gets a lot cleaner when I remember to add the classpath.	2009-03-29 00:29:20 +00:00
ivy.xml	Bump picard and samtools to latest.	2009-03-27 02:26:28 +00:00