depristo c4707631e2 MethodsDevelopmentPipeline is now the test bed for large scale AWS_S3 logging. Can be disabled from command line if this is necessary ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5203 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-06 17:03:45 +00:00
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ASHGcalling.scala	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
MethodsDevelopmentCallingPipeline.scala	MethodsDevelopmentPipeline is now the test bed for large scale AWS_S3 logging. Can be disabled from command line if this is necessary	2011-02-06 17:03:45 +00:00
Phase1Calling.scala	Moving Phase1Calling qscript over to using the cleaned, pre-BAQed bams	2011-01-21 02:41:20 +00:00
Phase1Cleaning.scala	Always best to use the left-aligned version of the dbsnp vcf	2011-01-26 20:21:50 +00:00
VQSR_parameterSearch.scala	Another relevant qscript. I use this one to do thousands of variant recalibration jobs to search for optimal parameters.	2011-01-19 18:17:32 +00:00
variantRecalibrator.scala	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00