gatk3的最后一个经典版本3.8

Geraldine Van der Auwera c3e01fea40 Added several more info types / annotations to GATKDocs ... -- top-level walker type (locus, read etc) -- parallelism options (nt or nct) -- annotation type (for Variant Annotations) -- downsampling settings that override engine defaults -- reference window size -- active region settings -- partitionBy info		2013-02-21 03:12:40 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Merge pull request #47 from broadinstitute/aw_reduceread_perf_1_GSA-761	2013-02-20 04:49:07 -08:00
public	Added several more info types / annotations to GATKDocs	2013-02-21 03:12:40 -05:00
settings	Added several more info types / annotations to GATKDocs	2013-02-21 03:12:40 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00