gatk3的最后一个经典版本3.8

Mark DePristo c3c11b2462 A simple utility that evaluates parallel performance in tribble ... Tests low-level multi-threading performance of tribble Creates a thread pool that reads the input VCF file in parallel with N threads from 1 to maxThreads (in powers of 2) and emits the wall time needed to process the entire file. Assumes the VCF file has a chromosome named 1 that has at least 250 Mb. The output is a nice table showing performance of Tribble THREAD: 1-250000001 read 2288096 objects TIME: 1 thread runtime 12.58 THREAD: 125000001-250000001 read 1098468 objects THREAD: 1-125000001 read 1189628 objects TIME: 2 thread runtime 8.66 THREAD: 124000001-186000001 read 406935 objects THREAD: 62000001-124000001 read 569656 objects THREAD: 1-62000001 read 619972 objects THREAD: 186000001-248000001 read 678173 objects TIME: 4 thread runtime 8.57 THREAD: 124000001-155000001 read 101636 objects THREAD: 93000001-124000001 read 271390 objects THREAD: 62000001-93000001 read 298266 objects THREAD: 155000001-186000001 read 305299 objects THREAD: 31000001-62000001 read 297745 objects THREAD: 1-31000001 read 322227 objects THREAD: 217000001-248000001 read 334136 objects THREAD: 186000001-217000001 read 344037 objects TIME: 8 thread runtime 9.68		2011-08-15 21:42:23 -04:00
public	Removed a public -> private dependency in our test suite.	2011-08-12 17:29:10 -04:00
settings	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Fixing the javadoc/scaladoc targets in build.xml	2011-08-11 19:24:41 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00