Ryan Poplin c3b7dd1374 Misc cleanup in the HaplotypeCaller. Cleaning up unused arguments after recent changes to HC-GenotypingEngine		2012-11-26 12:19:11 -05:00
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bqsr	Soft clipped bases shouldn't be counted in the delocalized BQSR.	2012-11-25 21:55:29 -05:00
compression/reducereads	Co-Reduction implementation in ReduceReads	2012-11-14 10:33:21 -05:00
genotyper	Updating integration tests	2012-11-06 22:23:05 -08:00
haplotypecaller	Misc cleanup in the HaplotypeCaller. Cleaning up unused arguments after recent changes to HC-GenotypingEngine	2012-11-26 12:19:11 -05:00