48 lines
1.7 KiB
TeX
48 lines
1.7 KiB
TeX
\documentclass[10pt]{article}
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\usepackage[lmargin=0.3in, rmargin=0.3in, tmargin=0.9in, bmargin=0.9in, paperwidth=10.0in, paperheight=7.5in]{geometry}
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\usepackage{multicol}
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\usepackage{graphicx}
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\usepackage{fancyhdr}
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\pagestyle{fancy}
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\begin{document}
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\lhead{\bfseries{\Large{Sequencing and variant summary - $population$ samples}}}
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\rhead{}
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\chead{}
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\begin{tabular}{|r|l|l|}
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\multicolumn{3}{l}{\bfseries{Sequencing summary}} \\
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\hline
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& Lanes & Aligned Lanes \\
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\hline
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All & $allLanes$ & $allAlignedLanes$ \\
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Passed QC & $passedQCLanes$ & $passedQCAlignedLanes$ \\
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Failed Genotype QC & $failedGenotypeQCLanes$ & $failedGenotypeQCAlignedLanes$ \\
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Failed one of the DCC processes & $failedDCCProcessLanes$ & $failedDCCProcessAlignedLanes$ \\
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Not yet available from archive & $failedUnavailableLanes$ & $failedUnavailableAlignedLanes$ \\
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Suppressed in archive & $failedSuppressedLanes$ & $failedSuppressedAlignedLanes$ \\
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\hline
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\end{tabular}
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\begin{tabular}{|r|l|l|}
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\multicolumn{3}{l}{\bfseries{Variant summary}} \\
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\hline
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& UnifiedGenotyper & QCALL \\
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\hline
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Called samples & $ugSamples$ & $qcallSamples$ \\
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SNPs (all) & $ugAllSNPs$ & $qcallAllSNPs$ \\
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Ti/Tv (all) & $ugAllTiTv$ & $qcallAllTiTv$ \\
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SNPs (known) & $ugKnownSNPs$ & $qcallKnownSNPs$ \\
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Ti/Tv (known) & $ugKnownTiTv$ & $qcallKnownTiTv$ \\
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SNPs (novel) & $ugNovelSNPs$ & $qcallNovelSNPs$ \\
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Ti/Tv (novel) & $ugNovelTiTv$ & $qcallNovelTiTv$ \\
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\hline
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\end{tabular}
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\lfoot{}
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\cfoot{}
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\rfoot{\small{1,000 Genomes Automated Data Processing Report ($timestamp$)}}
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\end{document}
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