Mark DePristo c2b97030a4 IntervalUtils for completely balanced locus-based scatter/gather ... -- scatterLocusIntervals master utility -- Moved around some general functionality from GenomeLocSortedSet to GenomeLoc -- Util function for reversing a list (List<T> -> List<T>, unlike Collections version) -- DoC is PartitionType.INTERVAL -- Significant unit tests on new functionality (all passing) -- Ready for real-world testing, as soon as I can get LocusScatterFunction.scala to actually work		2011-11-02 10:49:40 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	IntervalUtils for completely balanced locus-based scatter/gather	2011-11-02 10:49:40 -04:00