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andrewk 9dee9ab51c Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@163 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-03-24 03:58:03 +00:00
..
EvalMapping.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
FastaQuals2Fastq.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
Geli2GFF.py Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter. 2009-03-24 03:58:03 +00:00
MergeEvalMapTabs.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
SAM.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
SamWalk.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
SamWalkTest.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
SimpleSAM.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
SimulateReads.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
SpawnMapperJobs.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
SpawnValidationJobs.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
StressTestGATK.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
WalkLociTest.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
Walker.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
aln_file.nocvs.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
aln_file.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
compSNPCalls.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
countCoverageWithSamtools.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
farm_commands.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
fasta.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
memo.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
pushback_file.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
qltout.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
samtooltest.sh Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
tgtc2sam.py Move non-java code out of playground. 2009-03-23 19:31:38 +00:00