rpoplin 578e7fa36d Don't output -0 as qual value in VariantRecalibrator. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4044 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-16 16:47:58 +00:00
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arguments	fixes for the Tree index, and some small clean-up in the GATK.	2010-08-09 20:41:50 +00:00
contexts/variantcontext	moving tests over from the GATK to Tribble, and added a speed-up to the readNextRecord() that Mark suggested. Also removed the contained flag from the queries to Tribble in the GATK.	2010-08-10 17:54:59 +00:00
datasources	Massive cleanup of read filtering.	2010-08-11 20:17:11 +00:00
executive	A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests.	2010-04-08 06:14:15 +00:00
filters	A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests.	2010-04-08 06:14:15 +00:00
io	A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests.	2010-04-08 06:14:15 +00:00
iterators	Massive cleanup of read filtering.	2010-08-11 20:17:11 +00:00
refdata	fix for broken unit test; make sure when we can't get an index off of disk, the internal method returns null	2010-08-16 13:12:32 +00:00
traversals	Massive cleanup of read filtering.	2010-08-11 20:17:11 +00:00
walkers	Don't output -0 as qual value in VariantRecalibrator.	2010-08-16 16:47:58 +00:00