gatk-3.8

gatk3的最后一个经典版本3.8

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aaron c1df293feb remove testing code from tribble track builder, set the command line program in walker test to null to reclaim memory in integration tests, and removed some orphaned intergration tests. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4046 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-16 23:52:01 +00:00
R	plot now assumes 1 / 1000 is the min error rate, not 1/100	2010-08-11 14:48:22 +00:00
archive	Archiving	2010-07-27 02:47:18 +00:00
c	Reduce file handle usage.	2010-01-05 18:03:01 +00:00
doc	moved to wiki	2009-07-22 16:35:23 +00:00
java	remove testing code from tribble track builder, set the command line program in walker test to null to reclaim memory in integration tests, and removed some orphaned intergration tests.	2010-08-16 23:52:01 +00:00
matlab	Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function	2009-11-30 20:02:25 +00:00
packages	Created a new playground script for cleaning bams in Firehose.	2010-08-13 23:52:24 +00:00
perl	no INFO output now that it's the default	2010-08-11 18:56:28 +00:00
python	now support -o output option, useful for pipelines	2010-08-06 14:57:04 +00:00
ruby	Adding the ruby directory, and a simple script to restart Bamboo	2009-12-03 22:48:48 +00:00
scala	Re-add the 1KG trigger as a comp as well	2010-08-16 18:19:47 +00:00
settings	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
shell	Useful script to see the status of gsa computing resources. Crontab'd and will be arriving as email at 8 am	2010-08-07 12:36:28 +00:00
testdata	and add changes to the vcf used in testing	2010-06-25 02:56:02 +00:00
LICENSE	Adding a license to the root directory in case BOSC checks for one. Has the	2010-04-20 16:04:29 +00:00
build.xml	Created a new playground script for cleaning bams in Firehose.	2010-08-13 23:52:24 +00:00
ivy.xml	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00