gatk3的最后一个经典版本3.8

kcibul c192a95998 changes in three files to make the HapMap RODs work: ... - HapMapAlleleFrequenciesROD.java - the referenceOrderedDatum implementation - PrepareROD.java - has a static block that loads the known ROD classes, had to add the above - GenomeAnalysisTK.java - when supplied a hapmap argument... loads the ROD git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@265 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-02 19:55:19 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Slight improvements to allele caller interface; fixed problem with printing progress	2009-04-02 16:44:12 +00:00
java	changes in three files to make the HapMap RODs work:	2009-04-02 19:55:19 +00:00
python	Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter.	2009-03-24 03:58:03 +00:00
settings	Bump picard and samtools to latest.	2009-03-27 02:26:28 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Bug fix: build couldn't be forced to core. Now it can be.	2009-03-29 01:36:25 +00:00
ivy.xml	Bump picard and samtools to latest.	2009-03-27 02:26:28 +00:00