hanna c177801d81 Add deprecated command-line arguments, and switched over UG to output to ... -o/--out instead of -varout. Let's watch as our intrepid support engineer gracefully responds to all the incoming questions of the form: "the GATK told me to use -o instead of -varout. What do I do?" git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4078 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-22 21:01:44 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Add deprecated command-line arguments, and switched over UG to output to	2010-08-22 21:01:44 +00:00
test	Add deprecated command-line arguments, and switched over UG to output to	2010-08-22 21:01:44 +00:00