gatk3的最后一个经典版本3.8

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David Roazen c15751e41e SAMReaderID: fix bug with hash code and equals() method -Two SAMReaderIDs that pointed at the same underlying bam file through a relative vs. an absolute path were not being treated as equal, and had different hash codes. This was causing problems in the engine, since SAMReaderIDs are often used as the keys of HashMaps. -Fix: explicitly use the absolute path to the encapsulated bam file in hashCode() and equals() -Added tests to ensure this doesn't break again		2013-07-15 13:57:00 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	- Added per-sample AlleleBiasedDownsampling capability to HaplotypeCaller	2013-07-12 16:22:02 -04:00
public	SAMReaderID: fix bug with hash code and equals() method	2013-07-15 13:57:00 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Fail gracefully in the packaging system when bcel is not installed	2013-07-02 15:50:51 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit