gatk-3.8/public
Khalid Shakir 0092a0b9eb Faster builds, with updates to documentation generation.
Reading the multiple GATKText files as a single stream, especially with new top level target executable jar files pointing to a lib folder.
Don't dirty the build with a new GATKText.properties if input files are unmodified.
Stop warning on undocumented abstract classes.
Fixed ClassNotFoundException/NoClassDefFoundError by fixing ResourceBundleExtractorDoclet artifact.
Excluding Exceptions from documentation.
Removed custom log4j dependency from ResourceBundleExtractorDoclet.
Stop generating the dependency reduced pom during shade.
Stop regenerating gsalib when the files are already up to date.
Disabled mvn site generation from external-example.
2014-11-05 00:32:23 +08:00
..
VectorPairHMM Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
c After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive. 2014-05-19 17:36:41 -04:00
chainFiles The contig is named MT not M in b36. Delivers PT68890442. 2014-04-08 10:03:47 -04:00
doc Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
external-example Faster builds, with updates to documentation generation. 2014-11-05 00:32:23 +08:00
gatk-engine Faster builds, with updates to documentation generation. 2014-11-05 00:32:23 +08:00
gatk-queue Faster builds, with updates to documentation generation. 2014-11-05 00:32:23 +08:00
gatk-queue-extensions-generator Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:46 +08:00
gatk-queue-extensions-public Disabling tests for Lsf706 specific functionality. 2014-11-04 01:31:18 +08:00
gatk-root Merge pull request #768 from broadinstitute/pd_bcf_failures 2014-10-31 15:30:56 -04:00
gatk-tools-public Faster builds, with updates to documentation generation. 2014-11-05 00:32:23 +08:00
gatk-utils Faster builds, with updates to documentation generation. 2014-11-05 00:32:23 +08:00
gsalib Faster builds, with updates to documentation generation. 2014-11-05 00:32:23 +08:00
java/config Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
package-tests Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:46 +08:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
repo Revved Picard/htsjdk 2014-10-30 21:16:25 -04:00
src/main Added faster built executable, non-packaged jars. 2014-11-05 00:30:46 +08:00
pom.xml Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00