gatk3的最后一个经典版本3.8

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Eric Banks c133909d32 Fixed edge condition in the realigner where a realigned read can sometimes get partially aligned off the end of the contig. Now we ignore such reads (which is much easier than trying to figure out when to soft-clip). Added unit test.		2014-01-08 00:37:28 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Fixed edge condition in the realigner where a realigned read can sometimes get partially aligned off the end of the contig.	2014-01-08 00:37:28 -05:00
public	Write a new tool for spliting reads that have N cigar string.	2014-01-01 22:21:36 -05:00
settings	Rev'ing the Variant jar to incorporate some patches to the BCF encoder that Menachem needs.	2014-01-02 23:33:17 -05:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Separate tests that access the knowledge base from other tests	2013-12-06 11:31:35 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

The Genome Analysis Toolkit