gatk3的最后一个经典版本3.8

Christopher Hartl c1211ad3a1 Full test suite of LD-corrected GRM calculation. The correctness of this code is now largely verified. Matches GCTA when no correction is used (up to 6 decimal places). Bed reading relies on a particular test directory that is still local. The rest is all generated in unit test fashion.		2012-10-12 00:46:02 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Added an argument to RR to allow polyploid consensus creation (by default it is turned off). This will eventually be replaced by the known SNPs track trigger.	2012-09-28 11:44:25 -04:00
public	Allow VCFs without PLs to be converted to a bed file with genotypes other than no-call (by setting the minimum GQ to <=0). Performance enhancements to GRM suite.	2012-10-03 21:36:35 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00