corin cd6ace1b47 Includes UG version of indel genotyping rather than IGV2 ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5191 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-04 20:25:46 +00:00
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qscript	Includes UG version of indel genotyping rather than IGV2	2011-02-04 20:25:46 +00:00
src/org/broadinstitute/sting	Bug fixes in the in process function (spoiled by python: was not closing my writers). SortByRef now works somewhat like the perl script does, rather than doing a memory-expensive sort. Adding a QTools qscript which is kinda clunky, and will be used mostly for integration tests of these IPFs, pending some better way to construct argument collections and function accessors at compile-time.	2011-02-03 17:32:46 +00:00
test/org/broadinstitute/sting/queue	A successful attempt at a queue integration test, ensuring that the InProcessFunction libraries are working as expected.	2011-02-03 21:30:35 +00:00