Mauricio Carneiro 16caca0822 BLASR BAMs and new BWA parameters ... *Added the functions to turn a BLASR generated BAM file into a usable BAM file. *Modified the bwa parameters according to test results from NA12878 pb2k dataset.		2011-08-24 17:04:07 -04:00
..
engine	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00
extensions	BLASR BAMs and new BWA parameters	2011-08-24 17:04:07 -04:00
function	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00
library	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
util	added BWA SW alignment	2011-08-09 17:05:24 -04:00
QCommandLine.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
QException.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
QScript.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
QScriptManager.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
QSettings.scala	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00