Eric Banks ce55ba98f4 Don't try to left align indels in unmapped reads (which for some reason can still have CIGARs) because the ref context is null.		2012-08-29 15:01:11 -04:00
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AlignmentContext.java	Officially removing all code associated with extended events. Note that I still have a longer term project on my plate to refactor the ReadBackedPileup, but that's a much larger effort.	2012-06-15 15:55:03 -04:00
AlignmentContextUtils.java	Officially removing all code associated with extended events. Note that I still have a longer term project on my plate to refactor the ReadBackedPileup, but that's a much larger effort.	2012-06-15 15:55:03 -04:00
ReferenceContext.java	Don't try to left align indels in unmapped reads (which for some reason can still have CIGARs) because the ref context is null.	2012-08-29 15:01:11 -04:00