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Laura Gauthier c09667a20d Fix bug in CombineGVCFs so now sample 2 variants occuring within sample 1 deletions get merged properly. 
CombineGVCFs now outputs ref conf for the duration of deletions so that SNPs occuring in other samples aligned with those deletions will be genotyped correctly
 		2014-11-05 09:11:47 -05:00
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src Fix bug in CombineGVCFs so now sample 2 variants occuring within sample 1 deletions get merged properly. 2014-11-05 09:11:47 -05:00
pom.xml Faster builds, with updates to documentation generation. 2014-11-05 00:32:23 +08:00