gatk3的最后一个经典版本3.8

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Laura Gauthier c09667a20d Fix bug in CombineGVCFs so now sample 2 variants occuring within sample 1 deletions get merged properly. CombineGVCFs now outputs ref conf for the duration of deletions so that SNPs occuring in other samples aligned with those deletions will be genotyped correctly		2014-11-05 09:11:47 -05:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Fix bug in CombineGVCFs so now sample 2 variants occuring within sample 1 deletions get merged properly.	2014-11-05 09:11:47 -05:00
public	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

The Genome Analysis Toolkit