hanna c08936d6f4 Added a reservoir downsampler which can sample elements in an iterator uniformly ... from a stream (see Vitter 1985). Thanks to Eric and Andrey for the pointer. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3197 348d0f76-0448-11de-a6fe-93d51630548a		2010-04-19 20:48:14 +00:00
..
alignment	Forgot to uncomment the AlignerIntegrationTest before committing. And yes, matt, commenting it out is, in fact, easier than just setting my classpath.	2010-04-01 17:17:16 +00:00
gatk	Fixing the performance tests: we need to catch the RuntimeException (not samtools' RuntimeIOExcpetion). Also, CountCovariates doesn't need the catch.	2010-04-19 14:28:12 +00:00
playground	Moving VE2 to core; calling it "VariantEval" (one more checkin coming)	2010-04-15 20:25:47 +00:00
utils	Added a reservoir downsampler which can sample elements in an iterator uniformly	2010-04-19 20:48:14 +00:00
BaseTest.java	Adding performance tests for the recalibrator (Whole Genome and Whole Exome tests).	2010-04-09 18:30:59 +00:00
WalkerTest.java	A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests.	2010-04-08 06:14:15 +00:00