ebanks d73c63a99a Redoing the conversion to VariantContext: instead of walkers passing in a ref allele, they pass in the ref context and the adaptors create the allele. This is the right way of doing it. ... Also, adding some more useful integration tests. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3194 348d0f76-0448-11de-a6fe-93d51630548a		2010-04-19 05:47:17 +00:00
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filters	Initial commit of tools under development for data QC through firehose.	2010-02-12 19:13:24 +00:00
multisamplecaller	Standardize the dbsnp track name in preparation for case-sensitivity	2010-04-15 19:41:57 +00:00
refdata	removing some outdated ROD classes (PooledEMSNPROD and SangerSNPROD), removing an out-of-date interface (VariantBackedByBenotype), and moving AnalyzeAnnotationWalker over to VariationContext.	2010-04-16 18:59:29 +00:00
walkers	Redoing the conversion to VariantContext: instead of walkers passing in a ref allele, they pass in the ref context and the adaptors create the allele. This is the right way of doing it.	2010-04-19 05:47:17 +00:00