kiran 499c422de6 A version of the four-base caller that computes the probability distribution over base call space by initializing off the Bustard calls rather than the ICs. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@173 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-24 20:11:39 +00:00
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fourbasecaller	A version of the four-base caller that computes the probability distribution over base call space by initializing off the Bustard calls rather than the ICs.	2009-03-24 20:11:39 +00:00
gatk	Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter.	2009-03-24 03:58:03 +00:00
illumina	Fixed a bug in the parsing of the second end of the pair.	2009-03-24 14:34:37 +00:00
indels	stop printing sw matrix and other debug infoant	2009-03-24 18:15:52 +00:00
utils	Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter.	2009-03-24 03:58:03 +00:00
ValidateSAM.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00