gatk3的最后一个经典版本3.8

Eric Banks c0030f3f2d We no longer subset down to the best N haplotypes for the GL calculation. ... I explain in comments within the code that this was causing problems with the marginalization over events.		2013-06-11 11:51:26 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	We no longer subset down to the best N haplotypes for the GL calculation.	2013-06-11 11:51:26 -04:00
public	Implement ActiveRegionTraversal RefMetaDataTracker for map call; HaplotypeCaller now annotates ID from dbSNP	2013-06-10 16:20:31 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00