gatk3的最后一个经典版本3.8

Eric Banks bfc551f612 Fix for GSA-589: SelectVariants with -number gives biased results. The implementation was not good and it's not worth keeping this busted code around given that we have a working implementation of a fractional random sampling already in place, so I removed it.		2012-10-06 22:39:49 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	After merging with Yossi's fix I can confirm that the AD is fixed when going through the HC too. Added similar fixes to DP and FS annotations too.	2012-10-05 16:37:42 -04:00
public	Fix for GSA-589: SelectVariants with -number gives biased results. The implementation was not good and it's not worth keeping this busted code around given that we have a working implementation of a fractional random sampling already in place, so I removed it.	2012-10-06 22:39:49 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00