carneiro c4f9b262e5 removing the tech dev pipeline script from the repository to keep the methods development pipeline as the reference script. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4992 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-13 18:15:55 +00:00
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chartl	Removed stochasticity from IndelRealigner by random sampling using and seed based on the read list.	2011-01-07 22:03:36 +00:00
depristo	phasing per sample. tmp checkin	2010-12-22 20:14:06 +00:00
examples	Command lines for locally run Queue jobs no longer have to be escaped differently than bsub'ed jobs.	2011-01-10 21:07:29 +00:00
hanna	Trying out Queue for the first time.	2010-11-18 18:29:12 +00:00
kshakir	Checking in scripts used for testing the linear index MAX_FEATURES_PER_BIN.	2010-12-20 21:25:36 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
rpoplin	In the Methods development pipeline the call confidence threshold must be lowered from the default value for lowpass calling. What a bone-headed mistake!	2011-01-05 20:30:55 +00:00
fullCallingPipeline.q	Removed stochasticity from IndelRealigner by random sampling using and seed based on the read list.	2011-01-07 22:03:36 +00:00
recalibrate.scala	- After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list.	2010-10-21 06:37:28 +00:00