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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk/walkers
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Mark DePristo 5e593793af DiffEngine utility function simpleDiffFiles 
printSummaryReport now uses GATKReport for nice formating
Moved print formatting arguments into inner class provided to printing functions themselves, not the class
BAMDiffableReader only reads 1000 entries to avoid performance issue.  Work around for BAM files with non-unique names
Uncommented all of the incorrectly commented out CombineVariants integrationtests
BaseTest now uses DiffEngine to provide inline differences to VCF and BAM files
 		2011-07-11 23:10:27 -04:00
..
annotator Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
beagle Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
coverage Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
fasta Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
filters Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
genotyper Updated md5's from previous checkin 2011-06-29 13:37:15 -04:00
indels Updated to reflect dbsnp conversion fix 2011-06-30 11:55:56 -04:00
phasing Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
qc Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
recalibration Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
sequenom Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
varianteval Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
variantrecalibration Variant records coming out of the VQSR are now annotated with which input annotation was most divergent from the Gaussian mixture model. This gives a general sense for why each variant was removed from the callset. 2011-07-02 09:55:35 -04:00
variantutils DiffEngine utility function simpleDiffFiles 2011-07-11 23:10:27 -04:00
BAQIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ClipReadsWalkersIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PileupWalkerIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PrintReadsIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PrintReadsWalkerUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00