Mark DePristo 5e593793af DiffEngine utility function simpleDiffFiles ... printSummaryReport now uses GATKReport for nice formating Moved print formatting arguments into inner class provided to printing functions themselves, not the class BAMDiffableReader only reads 1000 entries to avoid performance issue. Work around for BAM files with non-unique names Uncommented all of the incorrectly commented out CombineVariants integrationtests BaseTest now uses DiffEngine to provide inline differences to VCF and BAM files		2011-07-11 23:10:27 -04:00
..
commandline	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
gatk	DiffEngine utility function simpleDiffFiles	2011-07-11 23:10:27 -04:00
jna	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
pipeline	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
utils	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
BaseTest.java	DiffEngine utility function simpleDiffFiles	2011-07-11 23:10:27 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00