Mark DePristo 5e593793af DiffEngine utility function simpleDiffFiles ... printSummaryReport now uses GATKReport for nice formating Moved print formatting arguments into inner class provided to printing functions themselves, not the class BAMDiffableReader only reads 1000 entries to avoid performance issue. Work around for BAM files with non-unique names Uncommented all of the incorrectly commented out CombineVariants integrationtests BaseTest now uses DiffEngine to provide inline differences to VCF and BAM files		2011-07-11 23:10:27 -04:00
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sting	DiffEngine utility function simpleDiffFiles	2011-07-11 23:10:27 -04:00