David Roazen cb84a6473f Downsampling: experimental engine integration ... -Off by default; engine fork isolates new code paths from old code paths, so no integration tests change yet -Experimental implementation is currently BROKEN due to a serious issue involving file spans. No one can/should use the experimental features until I've patched this issue. -There are temporarily two independent versions of LocusIteratorByState. Anyone changing one version should port the change to the other (if possible), and anyone adding unit tests for one version should add the same unit tests for the other (again, if possible). This situation will hopefully be extremely temporary, and last only until the experimental implementation is proven.		2012-09-06 15:03:27 -04:00
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src/org/broadinstitute/sting	Downsampling: experimental engine integration	2012-09-06 15:03:27 -04:00
test/org/broadinstitute/sting/gatk/walkers	Updating BQSR tests due to my change to reset BQSR calibration data	2012-08-31 19:51:09 -04:00