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Geraldine Van der Auwera bf875974d1 Prep MuTect2 and ContEst for release 
Renamed M2 to MuTect2
    Renamed ContaminationWalker to ContEst
    Refactored related tests and usages (including in Queue scripts)
    Moved M2 and ContEst + accompanying classes from private to protected
    Made QSS a StandardSomaticAnnotation (new annotation group/interface) to prevent it from being sucked in with the rest of the StandardAnnotation group
 		2015-11-24 16:43:20 -05:00
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gatk-package-distribution Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00
gatk-queue-extensions-distribution Updated licenses for 2015 2015-08-06 15:23:11 -04:00
gatk-queue-package-distribution Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00
gatk-tools-protected Prep MuTect2 and ContEst for release 2015-11-24 16:43:20 -05:00
pom.xml Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00