gatk3的最后一个经典版本3.8

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Geraldine Van der Auwera bf875974d1 Prep MuTect2 and ContEst for release Renamed M2 to MuTect2 Renamed ContaminationWalker to ContEst Refactored related tests and usages (including in Queue scripts) Moved M2 and ContEst + accompanying classes from private to protected Made QSS a StandardSomaticAnnotation (new annotation group/interface) to prevent it from being sucked in with the rest of the StandardAnnotation group		2015-11-24 16:43:20 -05:00
licensing	Updated licenses for 2015	2015-08-06 15:23:11 -04:00
protected	Prep MuTect2 and ContEst for release	2015-11-24 16:43:20 -05:00
public	Prep MuTect2 and ContEst for release	2015-11-24 16:43:20 -05:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`.	2015-09-14 12:20:36 -04:00

The Genome Analysis Toolkit