gatk3的最后一个经典版本3.8
 
 
 
 
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Geraldine Van der Auwera bf875974d1 Prep MuTect2 and ContEst for release
Renamed M2 to MuTect2
    Renamed ContaminationWalker to ContEst
    Refactored related tests and usages (including in Queue scripts)
    Moved M2 and ContEst + accompanying classes from private to protected
    Made QSS a StandardSomaticAnnotation (new annotation group/interface) to prevent it from being sucked in with the rest of the StandardAnnotation group
2015-11-24 16:43:20 -05:00
licensing Updated licenses for 2015 2015-08-06 15:23:11 -04:00
protected Prep MuTect2 and ContEst for release 2015-11-24 16:43:20 -05:00
public Prep MuTect2 and ContEst for release 2015-11-24 16:43:20 -05:00
settings/helpTemplates Numerous doc fixes; mostly formatting and clarifications 2015-05-03 00:28:46 +02:00
.gitignore Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale) 2014-04-01 16:14:52 -04:00
README.md Update README file for the 2.6 release 2013-06-20 13:08:29 -04:00
ant-bridge.sh Added faster built executable, non-packaged jars. 2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
pom.xml Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`. 2015-09-14 12:20:36 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/