ebanks bf7bab754e Made getPileupWithoutMappingQualityZeroReads() and getPileupWithoutDeletions() more efficient, per Mark's cue. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2356 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-15 04:35:21 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Made getPileupWithoutMappingQualityZeroReads() and getPileupWithoutDeletions() more efficient, per Mark's cue.	2009-12-15 04:35:21 +00:00
test/org/broadinstitute/sting	Pull the genotype (and genotype quality) calculation out of the VCF code and into the Genotyper.	2009-12-15 04:29:28 +00:00