gatk-3.8/protected/gatk-protected
Valentin Ruano-Rubio bf630abe88 Fixed nocall (./.) without PLs bug in GVCF output
Story:

https://www.pivotaltracker.com/story/show/65388246

Additional changes and notes:

1. The fix consist in forcing the output of all PLs by setting the standard flag for that '-allSitePLs'.

2. BP_RESOLUTION was handled differently to GVCF in some aspect that should be common. That has been fixed.
2014-02-07 19:30:26 -05:00
..
src Fixed nocall (./.) without PLs bug in GVCF output 2014-02-07 19:30:26 -05:00
pom.xml Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00