gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio bf630abe88 Fixed nocall (./.) without PLs bug in GVCF output Story: https://www.pivotaltracker.com/story/show/65388246 Additional changes and notes: 1. The fix consist in forcing the output of all PLs by setting the standard flag for that '-allSitePLs'. 2. BP_RESOLUTION was handled differently to GVCF in some aspect that should be common. That has been fixed.		2014-02-07 19:30:26 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Fixed nocall (./.) without PLs bug in GVCF output	2014-02-07 19:30:26 -05:00
public	Fixed up some of the genotype-level annotations being propogated in the single sample HC pipeline.	2014-02-07 12:47:54 -05:00
settings	Switched commited dependency repository from ivy to maven.	2014-02-03 13:50:46 -05:00
.gitignore	Rev Picard (public) to 1.107.1676	2014-02-04 22:04:28 -05:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00

The Genome Analysis Toolkit