Eric Banks bf3d61ce82 The default value for --contamination_fraction_to_filter is now 0.05 (5%) in both UG and HC. Users of GATK-lite get pushed down to 0% by default (since it's not enabled) or get a user error if they try to set it.		2012-10-26 01:04:51 -04:00
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src/org/broadinstitute/sting	Merge branch 'master' of ssh://gsa2/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-10-25 02:49:54 -04:00
test/org/broadinstitute/sting	The default value for --contamination_fraction_to_filter is now 0.05 (5%) in both UG and HC. Users of GATK-lite get pushed down to 0% by default (since it's not enabled) or get a user error if they try to set it.	2012-10-26 01:04:51 -04:00