hanna bf0b6bd486 Update integration tests to use the new ROD syntax. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4112 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-25 18:13:30 +00:00
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annotator	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
coverage	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
fasta	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
filters	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
genotyper	Forgot to update UG performance test to reflect the new -o argument.	2010-08-23 00:57:16 +00:00
indels	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
qc	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
recalibration	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
sequenom	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
varianteval	Command-line argument tagging is in, and the ROD system is hacked slightly to support the new syntax	2010-08-25 03:47:57 +00:00
variantrecalibration	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
variantutils	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
PileupWalkerIntegrationTest.java	Removed hard-coded pointers to references	2010-08-04 17:59:37 +00:00
PrintReadsWalkerUnitTest.java	Modifications to the output system for better interaction with @Output. Multiplexed arguments. More details in the Monday meeting.	2010-08-22 14:27:05 +00:00
VariantsToVCFIntegrationTest.java	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00