andrewk bef475778f - Updated --hapmap switch to --hapmap-chip to reflect the data being chip data for an individual rather than population allele frequency data in Hapmap ... - Corrected some bugs to get metrics logging working - Added a switch --force_1base_probs to ignore 4-base probalities if they exist git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@287 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-03 17:32:31 +00:00
..
AlleleFrequencyEstimate.java	- A lot of code cleaned up; separated metrics code from AlleleFrequencyMetricsWalker into AlleleMetrics and eliminated the former class. AFMW (aside from being a name so long that it warrants an acronym) can now be implemented by passing an option to AlleleFreqeuncyWalker that logs metrics to a file.	2009-04-03 02:09:10 +00:00
AlleleMetrics.java	- Updated --hapmap switch to --hapmap-chip to reflect the data being chip data for an individual rather than population allele frequency data in Hapmap	2009-04-03 17:32:31 +00:00
CountedObject.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
CountedObjectComparatorAdapter.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
Interval.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
SimpleInterval.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
WhitespaceTextFileParser.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00