Mauricio Carneiro d7367c152a Fixing 'revert' when not realigning ... RevertSam was reverting the alignment information and that was screwing up the pipeline if you didn't want to run it with BWA. Fixed.		2011-10-20 17:01:54 -04:00
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qscript/org/broadinstitute/sting/queue/qscripts	Fixing 'revert' when not realigning	2011-10-20 17:01:54 -04:00
src/org/broadinstitute/sting/queue	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
test/org/broadinstitute/sting/queue	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00