Guillermo del Angel bebd5c14b8 Update general ploidy md5's due to bad merge of md5's in previous commit, and new shortened interval definition for EMIT_ALL_CONFIDENT_SITES was buggy		2012-09-18 20:12:15 -04:00
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bqsr	Complete overhaul of previous commits to make it all work with scatter-gather. Now tracks output files correctly and can print to stdout.	2012-09-12 15:15:40 -04:00
compression/reducereads	Fixed divide by zero bug when downsampler goes over regions where reads are all filtered out. Added Guillermo's bug report as an integration test	2012-08-09 13:02:11 -04:00
genotyper	Update general ploidy md5's due to bad merge of md5's in previous commit, and new shortened interval definition for EMIT_ALL_CONFIDENT_SITES was buggy	2012-09-18 20:12:15 -04:00
haplotypecaller	Adding HC integration test for _structural_ insertions and deletions.	2012-09-12 12:23:00 -04:00