Eric Banks be9fcba546 Don't allow triggering of polyploid consensus creation in regions where there is more than one het, as it just doesn't work properly. We could probably refactor at some point to make it work, but it's not worth doing that now (especially as it should be rare to have multiple proximal known hets in a single sample exome).		2012-10-07 16:32:48 -04:00
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src/org/broadinstitute/sting	Don't allow triggering of polyploid consensus creation in regions where there is more than one het, as it just doesn't work properly. We could probably refactor at some point to make it work, but it's not worth doing that now (especially as it should be rare to have multiple proximal known hets in a single sample exome).	2012-10-07 16:32:48 -04:00
test/org/broadinstitute/sting/gatk/walkers	After merging with Yossi's fix I can confirm that the AD is fixed when going through the HC too. Added similar fixes to DP and FS annotations too.	2012-10-05 16:37:42 -04:00