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gatk-3.8/public/java/test/org/broadinstitute/sting/utils
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Mark DePristo 3227143a1c Systematic test code for FragmentPileup 
-- Creates all combinatinos of overlapping and non-overlapping read pair pileups in all orientations and first/second pairings to validate fragment detection.
 		2011-10-19 17:50:27 -04:00
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R Split RScriptExecutorUnitTest into public and private test classes. 2011-10-14 20:04:42 -04:00
baq Putative fix for BAQ array out of bounds 2011-09-21 11:25:08 -04:00
bed Fixing broken paths to the testdata directory throughout the codebase. 2011-06-29 17:36:47 -04:00
clipreads Fixing conflicts 2011-10-03 19:07:59 -07:00
codecs Fixed long-standing bug in tribble index creation 2011-09-20 10:53:18 -04:00
collections Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
fasta Reduced the number of combinations being tested here, which was overkill 2011-09-01 10:42:43 -04:00
genotype/vcf Make DiploidGenotype enum private to walkers.genotyper 2011-09-24 08:48:33 -04:00
interval Merged bug fix from Stable into Unstable 2011-10-04 21:00:34 -07:00
pileup Systematic test code for FragmentPileup 2011-10-19 17:50:27 -04:00
report Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
sam Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
text GATKReport v0.2: 2011-08-03 00:24:47 -04:00
threading Removed GATK use of distributed parallelism framework. 2011-07-20 16:26:09 -04:00
variantcontext this.allele, getAlleles(), and getAltAlleles() now return List not set 2011-10-09 11:45:55 -07:00
BaseUtilsUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
GenomeLocParserUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
GenomeLocSortedSetUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
GenomeLocUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
MWUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
MathUtilsUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PathUtilsUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ReadUtilsUnitTest.java Fixing conflicts 2011-10-03 19:07:59 -07:00
ReservoirDownsamplerUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
SimpleTimerUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
UtilsUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00