gatk3的最后一个经典版本3.8

David Roazen be729410b9 run_parallel_tests: use independent java.io.tmpdir for each run ... -Turns out the Java 6 JCE crypto library (used to decrypt our AWS keys) uses the current list of files in the java.io.tmpdir as a source of entropy. This file list operation was prohibitively slow with a large, shared temp directory. -Starting with an independent, empty temp dir for each run should solve this problem, and get rid of all/most of the test timeouts we've been seeing.		2013-03-14 08:55:26 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	New GATKSAMRecord concept of a strandless read, update to FS	2013-03-13 11:16:36 -04:00
public	New GATKSAMRecord concept of a strandless read, update to FS	2013-03-13 11:16:36 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00